Pymol peptide backbone alignment plus#

(below sequence annotations) or first (above sequence annotations). Sort annotations by - Annotations can be unsorted, sortedīy the order of the related sequences in the alignment, or by label.Īutocalculated annotations (e.g. Sort alignment by - When the alignment is loaded in, it canīe ordered as read (No sort), or sorted by Id or pairwise identity. Wrap Alignment - Select whether to open new alignment Gap Symbol - The default gap symbol may be set to either Smooth Font - Toggles anti-aliasing on / off for faster Sequence Name Italics - select to apply the italicised

Sequence symbols will be rendered as a '.', highlighting mutations Show Unconserved - When this is selected, all consensus References and Non-positional annotation in the tooltip displayed Sequence ID Tooltip: Control the display of Database Left-hand edge of the sequence alignment, rather than the left-handįont - The default font name, size and style can be set for Right Align IDs - select to align all sequence IDs to the If not selected, the displayed ID will be the name

Pymol peptide backbone alignment plus#

The name of a sequence plus the start and end residues in the format Show group: Conservation and Consensus controls the displayĬonsensus: Histogram and Logo checkboxes control theĭisplay of the consensus histogram and sequence logo for consensusįull Sequence ID - If selected the ID panel will display Occupancy and Consensus for the alignment mayīe shown or hidden by default using the checkboxes adjacent and Standard annotations Conservation, Quality, Panel may have several rows describing the whole alignment. Show Annotations - If this is selected the new window willĭisplay an annotation panel below the sequences. Open Overview Window - When this is selected, the alignment overview panel is opened Window will stretch to fit the available space. Maximise Window - If this is selected, a new alignment Servers that Jalview uses, and change the layout of the Service' Preferences tab allows you to configure the JABAWS Preferences tab allows you to adjust how much memory isĪllocated to Jalview when it is launched.

Preferences tab contains settings affecting behaviour when editing alignments. Preferences tab contains settings affecting the export of Links shown in the Link submenu in the Sequence Preferences tab shows the currently configured URL Preferences tab allows you to configure Jalview's internet Preferences tab allows you to configure options for obtaining Preferences tab configures defaults for the overview window. Preferences tab allows you to configure default colourschemes Preferences tab allows you to configure the default display for

There are eight tabs in the Preferences dialog box: The preferences panel is opened from the Jalview Desktop’s Tools